Package: Rarity 1.3-8

Rarity: Calculation of Rarity Indices for Species and Assemblages of Species

Allows calculation of rarity weights for species and indices of rarity for assemblages of species according to different methods (Leroy et al. 2012, Insect. Conserv. Divers. 5:159-168 <doi:10.1111/j.1752-4598.2011.00148.x>; Leroy et al. 2013, Divers. Distrib. 19:794-803 <doi:10.1111/ddi.12040>).

Authors:Boris Leroy

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Rarity.pdf |Rarity.html
Rarity/json (API)

# Install 'Rarity' in R:
install.packages('Rarity', repos = c('https://farewe.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/farewe/rarity/issues

Datasets:
  • spid.occ - Occurrences of spiders of Western France at two different scales.

On CRAN:

Conda:

3.61 score 1 stars 1 packages 27 scripts 356 downloads 4 exports 0 dependencies

Last updated 2 years agofrom:723e20e284. Checks:4 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 20 2025
R-4.5-winOKFeb 20 2025
R-4.5-macOKFeb 20 2025
R-4.5-linuxOKFeb 20 2025
R-4.4-winNOTEFeb 20 2025
R-4.4-macNOTEFeb 20 2025
R-4.3-winNOTEFeb 20 2025
R-4.3-macNOTEFeb 20 2025

Exports:corPlotIrrIsrrWeights

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
A package to calculate rarity indices for species and assemblages of species for conservation studiesRarity-package Rarity
Correlation plotscorPlot
Index of Relative RarityIrr Irr,data.frame,data.frame-method Irr,data.frame,matrix-method Irr,data.frame,vector-method Irr,matrix,data.frame-method Irr,matrix,matrix-method Irr,matrix,vector-method Irr,vector,data.frame-method Irr,vector,matrix-method Irr,vector,vector-method
Index of Summed RarityIsr Isr,data.frame,data.frame-method Isr,data.frame,matrix-method Isr,data.frame,vector-method Isr,matrix,data.frame-method Isr,matrix,matrix-method Isr,matrix,vector-method Isr,vector,data.frame-method Isr,vector,matrix-method Isr,vector,vector-method
Calculation of rarity weights at a single or at multiple scalesrWeights rWeights,data.frame-method rWeights,matrix-method rWeights,vector-method rWeights-method
Occurrences of spiders of Western France at two different scales.spid.occ