Package: virtualspecies 1.6

virtualspecies: Generation of Virtual Species Distributions

Provides a framework for generating virtual species distributions, a procedure increasingly used in ecology to improve species distribution models. This package integrates the existing methodological approaches with the objective of generating virtual species distributions with increased ecological realism.

Authors:Boris Leroy [cre, aut], Christine N. Meynard [ctb], Celine Bellard [ctb], Franck Courchamp [ctb], Robin Delsol [ctb], Willson Gaul [ctb]

virtualspecies_1.6.tar.gz
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virtualspecies_1.6.tgz(r-4.4-any)virtualspecies_1.6.tgz(r-4.3-any)
virtualspecies_1.6.tar.gz(r-4.5-noble)virtualspecies_1.6.tar.gz(r-4.4-noble)
virtualspecies_1.6.tgz(r-4.4-emscripten)virtualspecies_1.6.tgz(r-4.3-emscripten)
virtualspecies.pdf |virtualspecies.html✨
virtualspecies/json (API)
NEWS

# Install 'virtualspecies' in R:

install.packages('virtualspecies', repos = c('https://farewe.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/farewe/virtualspecies/issues

On CRAN:

6.66 score 17 stars 1 packages 148 scripts 462 downloads 3 mentions 17 exports 55 dependencies

Last updated 10 months agofrom:2263b8138f. Checks:OK: 5 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 21 2024
R-4.5-win	NOTE	Nov 21 2024
R-4.5-linux	NOTE	Nov 21 2024
R-4.4-win	OK	Nov 21 2024
R-4.4-mac	OK	Nov 21 2024
R-4.3-win	OK	Nov 21 2024
R-4.3-mac	OK	Nov 21 2024

Exports:betaFun convertToPA custnorm formatFunctions generateRandomSp generateSpFromBCA generateSpFromFun generateSpFromPCA limitDistribution linearFun logisticFun plotResponse plotSuitabilityToProba quadraticFun removeCollinearity sampleOccurrences synchroniseNA

Dependencies:ade4 askpass class classInt cli colorspace curl DBI e1071 fansi farver ggplot2 glue gridExtra gtable httr isoband jsonlite KernSmooth labeling lattice lifecycle magrittr MASS Matrix mgcv mime munsell nlme openssl pillar pixmap pkgconfig proxy R6 raster RColorBrewer Rcpp RcppArmadillo rlang rnaturalearth s2 scales sf sp sys terra tibble units utf8 vctrs viridis viridisLite withr wk

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Generation of virtual species	virtualspecies-package
Beta response function	betaFun
Convert a virtual species distribution (or a suitability raster) into presence-absence	convertToPA
Normal function defined by extremes	custnorm
Format and visualise functions used to generate virtual species with 'generateSpFromFun'	formatFunctions
Generate a random virtual species distribution from environmental variables	generateRandomSp
Generate a virtual species distribution from a Between Component Analysis of environmental variables	generateSpFromBCA
Generate a virtual species distributions with responses to environmental variables	generateSpFromFun
Generate a virtual species distribution with a PCA of environmental variables	generateSpFromPCA
Limit a virtual species distribution to a defined area	limitDistribution
Linear function	linearFun
Logistic function	logisticFun
Visualise the response of the virtual species to environmental variables	plotResponse
Visualise the function that was used to transform environmental suitability into probability of occurrence	plotSuitabilityToProba
Quadratic function	quadraticFun
Remove collinearity among variables of a raster stack	removeCollinearity
Sample occurrences in a virtual species distribution	sampleOccurrences
Synchronise NA values among layers of a stack	synchroniseNA